PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj4g3v0336820.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

NAC

Protein Properties

Length: 188aa MW: 21887.3 Da PI: 4.787

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj4g3v0336820.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	119.4	3.3e-37	11	130	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrF Ptdeelvv++L++k++ + + +vi+++d+y ++Pw+L+ ++ +e ++wy++s+r +nr+t++gyW a g +++v++ Lj4g3v0336820.1 11 LPPGFRFYPTDEELVVHFLHRKASLLPYHP-DVIPDLDLYPYDPWQLHGRALEEGNQWYYYSRRT--------QNRITSNGYWVAMGMEEPVVA 95 79***********************998.99**********977778899**984........589************99 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ vg+kk vf+ g+ap+g+kt+W+m+eyrl Lj4g3v0336820.1 96 SsSNKRVGMKKYYVFHVGQAPDGNKTNWIMQEYRL 130 867778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-48	7	155	IPR003441	NAC domain
PROSITE profile	PS51005	46.333	11	157	IPR003441	NAC domain
Pfam	PF02365	3.0E-22	12	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MGENNNNVNN LPPGFRFYPT DEELVVHFLH RKASLLPYHP DVIPDLDLYP YDPWQLHGRA 60 LEEGNQWYYY SRRTQNRITS NGYWVAMGME EPVVASSSNK RVGMKKYYVF HVGQAPDGNK 120 TNWIMQEYRL PDSASSSRTS RRKTDHSKWV ICRVYEMDDD QDGDGTELSC LDEVFLSLDD 180 LEEVSLPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	7e-42	10	156	19	167	NAC domain-containing protein 19
3swm_B	7e-42	10	156	19	167	NAC domain-containing protein 19
3swm_C	7e-42	10	156	19	167	NAC domain-containing protein 19
3swm_D	7e-42	10	156	19	167	NAC domain-containing protein 19
3swp_A	7e-42	10	156	19	167	NAC domain-containing protein 19
3swp_B	7e-42	10	156	19	167	NAC domain-containing protein 19
3swp_C	7e-42	10	156	19	167	NAC domain-containing protein 19
3swp_D	7e-42	10	156	19	167	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269\|PubMed:15923329, ECO:0000269\|PubMed:18069942}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj4g3v0336820.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP010423	1e-144	AP010423.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT16M14, TM1779, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003531051.1	1e-106	NAC domain-containing protein 104
Refseq	XP_028247050.1	1e-106	NAC domain-containing protein 104-like
Swissprot	Q8GWK6	1e-85	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A0B2S4H5	1e-104	A0A0B2S4H5_GLYSO; NAC domain-containing protein 104
TrEMBL	I1KR61	1e-104	I1KR61_SOYBN; Uncharacterized protein
STRING	GLYMA08G08010.1	1e-105	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1736	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	2e-80	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]