PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0423240.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 207aa    MW: 23752.4 Da    PI: 5.4827
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0423240.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.000474685555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     + e+Er+RR+++ +++  Lr+l+            Ka+i   A+ YIk+Lq
  Lj4g3v0423240.1 46 NLEAERKRREKLSTRLLMLRSLMN-----------KATIIDDAITYIKKLQ 85
                     5689****************9975...........559***********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-1139104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-841106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-84388No hitNo description
SMARTSM003534.7E-64790IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MGHVYDDRLS MSLDDLCFNA ESGNNRGRMG RRRYDNDENQ TFKSKNLEAE RKRREKLSTR  60
LLMLRSLMNK ATIIDDAITY IKKLQEEVVS LTQELQEVEV TLEISKPKVD ELVDAAEEMK  120
KWGIQEEVQV TQMNGNKLWV KMIIENKRGT FRKLAESLDT CSIAMMDTNL TAIKGALVIT  180
TCIQGMDGEA LEVHQIKQLL LEIVRAI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14954ERKRRE
25055RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0423240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0105581e-108AP010558.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT03A02, TM1616, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027348379.11e-86transcription factor DYT1-like
TrEMBLA0A4P1QS551e-81A0A4P1QS55_LUPAN; Uncharacterized protein
STRINGXP_007148286.14e-69(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.17e-30bHLH family protein