PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0450480.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Dof
Protein Properties Length: 264aa    MW: 29656.1 Da    PI: 8.3894
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0450480.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1115.4e-354097259
           zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59
                     + ++lkcprC+s+ntkfCyynny+  qPr+fC+aC+r+WtkGG+lrnvPvGggr++++
  Lj4g3v0450480.1 40 QPESLKCPRCNSSNTKFCYYNNYNKLQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKR 97
                     56889***********************************************976655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-224197IPR003851Zinc finger, Dof-type
PfamPF027018.5E-314396IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.0094498IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104682IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGLSSKQVCS SGLDWNQTLL EAQDLELPKP KQQQQQQNQQ PESLKCPRCN SSNTKFCYYN  60
NYNKLQPRHF CRACKRHWTK GGTLRNVPVG GGRKNKRVRK PTTTTTTTAT TTSTNCTTPV  120
TPNMAIQALI RPPSMFLQQN LLMNIRDSES KDFGISSGNG MFLSSTNLHL PPQNQSFLFP  180
FSSSSSFDTN PCSSSNVNYN YGEEFKTIHD ESTINSTVMP STQPWEIAAK SGGMETSTYW  240
NWEDIDSLVS TDLKDPWNDS DIKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.22351e-85flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0450480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF2217512e-68EF221751.1 Glycine max Dof6 transcription factor (Dof6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159297.11e-110hypothetical protein PHAVU_002G226100g
TrEMBLV7CQU01e-109V7CQU0_PHAVU; Uncharacterized protein
STRINGXP_007159297.11e-110(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51073356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.27e-30Dof family protein