PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0451130.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HSF
Protein Properties Length: 206aa    MW: 24008.2 Da    PI: 7.9029
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0451130.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1063e-33321272102
                      HHHHHHHHHC....TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
     HSF_DNA-bind   2 Flkklyeile....deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                      Fl k+y++le    +e+ ++++sw+++g+ fvv+ + ef++  Lp+yFkh+nf+SF+RQLn+YgFkk+++++         weF+h++F++g +
  Lj4g3v0451130.1  32 FLLKTYDLLEeggaEEDGSKIVSWNSEGTGFVVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYGFKKTSSKR---------WEFQHEKFQRGCR 116
                      9*********88877899**************************************************9998.........************* PP

                      XXXXXXXXXXX CS
     HSF_DNA-bind  92 ellekikrkks 102
                      ++l +i rkk 
  Lj4g3v0451130.1 117 HMLVDITRKKC 127
                      ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.8E-3524120IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.5E-4128125IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.66E-2829125IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-2932125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-97486IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-98799IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MAENMVELNL DLGSFFSRHA GQSPRPRCPA PFLLKTYDLL EEGGAEEDGS KIVSWNSEGT  60
GFVVWSPAEF SELTLPRYFK HNNFSSFIRQ LNTYGFKKTS SKRWEFQHEK FQRGCRHMLV  120
DITRKKCEPS VFPSYLKSSS EENATMTSNS TEESKDYHEL LMEENKNLKK ERLELQTQIA  180
ECKSLQMKLL DCLSQFMDKH QNKVRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-1511253129Heat shock factor protein 1
5d5v_B1e-1511253129Heat shock factor protein 1
5d5v_D1e-1511253129Heat shock factor protein 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves and immature seeds. {ECO:0000269|PubMed:16202242}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0451130.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1454110.0BT145411.1 Lotus japonicus clone JCVI-FLLj-13E6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003516466.11e-114heat stress transcription factor B-2a
RefseqXP_028238608.11e-114heat stress transcription factor B-2a-like
SwissprotQ338B06e-36HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBLI3SY631e-152I3SY63_LOTJA; Uncharacterized protein
STRINGGLYMA01G34490.11e-114(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113572839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.11e-34heat shock factor 4
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Singh A, et al.
    OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).
    Cell Stress Chaperones, 2012. 17(2): p. 243-54
    [PMID:22147560]