PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj4g3v0451190.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

LSD

Protein Properties

Length: 141aa MW: 15389.5 Da PI: 7.8799

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj4g3v0451190.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	47.5	3e-15	53	77	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYPrGA++V+C++C+tV Lj4g3v0451190.1 53 CGSCRRLLSYPRGAKHVKCSCCQTV 77 ************************9 PP
2	zf-LSD1	38.3	2.2e-12	91	115	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +C +lL+YP+GA+ VRC+ C +V Lj4g3v0451190.1 91 CASCAVLLMYPYGASQVRCSACRFV 115 **********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.1E-18	50	80	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.7E-12	53	77	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.3E-10	88	116	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	9.9E-10	91	115	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MQSHEAEKQE DGDGPPPGWQ PKKEEDDDGP PPGWQTILTP PPSRPSGLAQ MVCGSCRRLL 60 SYPRGAKHVK CSCCQTVNIV LEADQVGQVK CASCAVLLMY PYGASQVRCS ACRFVTEIGE 120 HNKRPPWSVQ QRKPTPAQTG C

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj4g3v0451190.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027347488.1	4e-68	protein LOL2 isoform X1
Swissprot	O65426	3e-45	LOL2_ARATH; Protein LOL2
TrEMBL	A0A0B2PIB0	3e-65	A0A0B2PIB0_GLYSO; Protein LOL2
TrEMBL	A0A0R0J664	3e-65	A0A0R0J664_SOYBN; Uncharacterized protein
STRING	GLYMA07G31600.1	4e-66	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13026	31	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-44	lsd one like 2