PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0513460.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 167aa    MW: 18277.9 Da    PI: 8.3193
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0513460.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.0001456951054
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     + R +++ +++  L++l+ +      +K + +++L +A+eYI  L
  Lj4g3v0513460.2 56 KDRKEKVGERIVALQQLVSPY-----GKTDTSSVLNEAMEYIGFL 95
                     6788889999999*****999.....9***************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.12E-444100No hitNo description
Gene3DG3DSA:4.10.280.101.6E-845106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.2424695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-1147110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MIASSFCNAD SVFSREEGID VRKMIGHKRS PCSVDQSSYT SIASKKQKAD LSMSSKDRKE  60
KVGERIVALQ QLVSPYGKTD TSSVLNEAME YIGFLHKQVK LLSAPYLESS PATMMEGIEP  120
CSLRNRGLCL VPVSITMGVA ESNGADIWAP IKTTSPKSEK DIVSQFH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.28610.0cell culture| floral bud| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0513460.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1402530.0BT140253.1 Lotus japonicus clone JCVI-FLLj-17O23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027346024.11e-107transcription factor bHLH153 isoform X1
SwissprotQ7XJU27e-56BH153_ARATH; Transcription factor bHLH153
TrEMBLI3SIF61e-120I3SIF6_LOTJA; Uncharacterized protein
STRINGGLYMA02G15520.11e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108133138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.53e-58bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]