PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0620150.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 116aa    MW: 13486.3 Da    PI: 10.0731
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0620150.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.0002680106534
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...T CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskap 34 
                      h  +Er  R+++++ f +L + lP++   p
  Lj4g3v0620150.1  80 HIWIEREKRKKMRNMFGTLHSFLPQL---P 106
                      6679*********************6...3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.51E-674108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-478108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MALKGHSLNL GFFGENQSWG TLPTFDNTGE SIEKLDKKSQ NKKEKGNEEE ALLYKKRNRG  60
GTMEKNVVVD GEGKDDHEVH IWIEREKRKK MRNMFGTLHS FLPQLPSKVK EFRSFF
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0620150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1368750.0BT136875.1 Lotus japonicus clone JCVI-FLLj-8K2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607934.15e-26transcription factor bHLH95
TrEMBLI3S8S86e-79I3S8S8_LOTJA; Uncharacterized protein
STRINGAES901312e-25(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.18e-14bHLH family protein