PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0620710.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family FAR1
Protein Properties Length: 187aa    MW: 21646.6 Da    PI: 9.6327
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0620710.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.22e-2121106189
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                      kf+ +Y+ +vGF vrk++++++ ++g+i + +fvC keg r+++k++  k+ + r+et+tgCka+l +k+   gk  v+++ +eHnH l
  Lj4g3v0620710.1  21 KFWVDYGGKVGFGVRKQYTHHN-KSGSIATCRFVCCKEGLRKPDKRD-YKTINARPETKTGCKARLGLKNL-CGKLIVHDFIEEHNHIL 106
                      69***************99998.7788*****************999.99*******************99.9**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.4E-1721106IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MEEDWKPKVD MIFDSFEDAW KFWVDYGGKV GFGVRKQYTH HNKSGSIATC RFVCCKEGLR  60
KPDKRDYKTI NARPETKTGC KARLGLKNLC GKLIVHDFIE EHNHILHLQE TTHMLSSQRK  120
VSEVQCHQID VADDAGLQQR KTFDLMSKQV GGRTNLGYTR LDQKNYVRNR RQRSMVRGEA  180
GEGVKND
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0620710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0096211e-144AP009621.1 Lotus japonicus genomic DNA, clone: LjT39G23, TM2115, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630666.12e-94protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_024630798.12e-94protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_024632861.12e-94protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_024634855.12e-94protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_024634870.12e-94protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A151RX651e-109A0A151RX65_CAJCA; Protein FAR1-RELATED SEQUENCE 5
STRINGAES877114e-91(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-24FAR1-related sequence 5