PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0633410.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HD-ZIP
Protein Properties Length: 117aa    MW: 13214.4 Da    PI: 10.4074
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0633410.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox314.2e-102223656
                     HCTS-HHHHHHHHHHHHHHHH CS
         Homeobox 36 klgLterqVkvWFqNrRakek 56
                     +l+L+ rqV vWFqNrRa+ k
  Lj4g3v0633410.1  2 QLKLQPRQVEVWFQNRRARSK 22
                     8******************98 PP
2HD-ZIP_I/II77.52.3e-252563589
      HD-ZIP_I/II 35 eLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89
                     +L+lqprqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rLe+eveeLr+
  Lj4g3v0633410.1  2 QLKLQPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLEREVEELRA 56
                     89***************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.289124IPR001356Homeobox domain
PfamPF000461.8E-7222IPR001356Homeobox domain
CDDcd000861.67E-6225No hitNo description
Gene3DG3DSA:1.10.10.603.4E-8230IPR009057Homeodomain-like
SuperFamilySSF466896.84E-8233IPR009057Homeodomain-like
PfamPF021837.0E-102458IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.2E-212467IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MQLKLQPRQV EVWFQNRRAR SKLKQTEMEC EYLKRWFGSL TEQNRRLERE VEELRAMKVG  60
PPTVIAPHTS KPLPASTLSM CPCCERVTTT VATVDKANTA AATLSPKVGT PAALMSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11624RRARSKLKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0633410.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006448268.18e-61homeobox-leucine zipper protein HOX3
RefseqXP_006469169.18e-61homeobox-leucine zipper protein HOX3
RefseqXP_027347874.14e-61homeobox-leucine zipper protein HOX3-like
SwissprotQ0JKX17e-48HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH387e-48HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A067FF132e-59A0A067FF13_CITSI; Uncharacterized protein
TrEMBLA0A2H5PQR82e-59A0A2H5PQR8_CITUN; Uncharacterized protein
TrEMBLV4TLZ82e-59V4TLZ8_9ROSI; Uncharacterized protein
STRINGXP_006469169.13e-60(Citrus sinensis)
STRINGXP_006448268.13e-60(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95063040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.14e-34homeobox-leucine zipper protein 17