PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0668200.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family LBD
Protein Properties Length: 174aa    MW: 19080.7 Da    PI: 7.841
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0668200.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260147.53.6e-46141131100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++l
  Lj4g3v0668200.1  14 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQL 107
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      a++++e
  Lj4g3v0668200.1 108 AVAQAE 113
                      *99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.84213114IPR004883Lateral organ boundaries, LOB
PfamPF031957.9E-4614111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MKESGRTKQG VPSPCAACKL LRRRCAQDCV FAPYFPADEP QKFANVHKVF GASNVNKMLQ  60
DLPEHQRGDA VSSMVYEANA RVRDPVYGCV GAISSLQQQI DLLQTQLAVA QAEAVHLRVR  120
QSTASSLWNP CHGPTSPTYT SVPPSSKILE SQAKHVFDMD MMVDHAGYGG DSMW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-5071134110LOB family transfactor Ramosa2.1
5ly0_B8e-5071134110LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.217460.0cell culture
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0668200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061310.0AP006131.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT28E04, TM0229, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607861.11e-101LOB domain-containing protein 4
SwissprotQ9SHE93e-70LBD4_ARATH; LOB domain-containing protein 4
TrEMBLG7JIR82e-99G7JIR8_MEDTR; LOB domain protein
STRINGAES900581e-100(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133434105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.18e-66LOB domain-containing protein 4