PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj4g3v0768520.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

LBD

Protein Properties

Length: 231aa MW: 25041.4 Da PI: 8.4168

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj4g3v0768520.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.7	1.3e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q Lj4g3v0768520.1 2 SCNGCRVLRKGCSESCILRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISNVPETQRPALFQSLLFEACGRTVNPVKGAVGLLWTGNWHVCQ 95 6******************************************************************************************* PP DUF260 90 lkaelall 97 +++e++l+ Lj4g3v0768520.1 96 AAVETVLR 103 999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.873	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.6E-27	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISNVPETQR 60 PALFQSLLFE ACGRTVNPVK GAVGLLWTGN WHVCQAAVET VLRGGTLRPL PELSGFDAPS 120 DEASDTDVWR IQDPSPNFRF TSSRSNNKVS AGGGKRRRSE DHVKLPAAAA AINLDLRLTP 180 IFLQKAPESN RRAGSPSMNS EESVTTTACL EGGIGDQWAH GGDRKVLNLF I

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.4455	0.0	floral bud\| flower\| pod\| protoplast\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj4g3v0768520.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP006432	0.0	AP006432.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT14C18, TM0330, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004509073.1	1e-133	LOB domain-containing protein 38
Swissprot	Q9SN23	2e-81	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A2Z6PEU4	1e-133	A0A2Z6PEU4_TRISU; Uncharacterized protein
STRING	XP_004509073.1	1e-132	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	7e-84	LOB domain-containing protein 38