PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0805590.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 118aa    MW: 13405.2 Da    PI: 10.2727
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0805590.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.81.7e-201257147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde l ++v+++G+++W++I++ ++ gR++k+c++rw + 
  Lj4g3v0805590.1 12 KGPWSPEEDEALQKLVERHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57
                     79******************************.***********985 PP
2Myb_DNA-binding37.36.4e-126698337
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                     ++T+eEd+ +++a++++G++ W+tIar +  gRt+
  Lj4g3v0805590.1 66 AFTPEEDDTIIRAHARFGNK-WATIARLLS-GRTD 98
                     79******************.*********.***7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.023762IPR017930Myb domain
SuperFamilySSF466891.69E-29898IPR009057Homeodomain-like
SMARTSM007171.5E-171160IPR001005SANT/Myb domain
PfamPF002494.8E-201257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-271371IPR009057Homeodomain-like
CDDcd001671.51E-161456No hitNo description
PROSITE profilePS500906.99259114IPR017877Myb-like domain
SMARTSM007170.07663116IPR001005SANT/Myb domain
PfamPF002491.5E-96698IPR001005SANT/Myb domain
CDDcd001677.59E-76698No hitNo description
Gene3DG3DSA:1.10.10.606.0E-137298IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MAMTRKEMDR IKGPWSPEED EALQKLVERH GPRNWSLISK SIPGRSGKSC RLRWCNQLSP  60
QVEHRAFTPE EDDTIIRAHA RFGNKWATIA RLLSGRTDPG RSSDPLAPGY REVLPGLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-321198390C-Myb DNA-Binding Domain
1msf_C7e-321198390C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.82411e-166cell culture| floral bud| flower| pod| protoplast| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0805590.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027345753.14e-65transcription factor MYB44-like
SwissprotO231604e-57MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A0L9TPG61e-63A0A0L9TPG6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R4V61e-63A0A0S3R4V6_PHAAN; Uncharacterized protein
STRINGXP_007155887.13e-64(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.11e-60myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]