PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj4g3v0901350.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

C2H2

Protein Properties

Length: 1043aa MW: 117162 Da PI: 6.8409

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj4g3v0901350.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.138	606	634	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	608	629	IPR007087	Zinc finger, C2H2
SuperFamily	SSF82199	3.16E-62	831	1041	No hit	No description
Gene3D	G3DSA:2.170.270.10	1.9E-58	832	1041	No hit	No description
PROSITE profile	PS50280	17.821	909	1041	IPR001214	SET domain
SMART	SM00317	2.7E-34	909	1043	IPR001214	SET domain
Pfam	PF00856	1.6E-18	920	1040	IPR001214	SET domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1043 aa Download sequence Send to blast
MLLVRPIDEF PQPTAYETHQ EALEIVKDLT VVRRFTMQDL ALSILYTLDQ LHSHALVETA 60 CDVMVWKELA MKASSCNAYS DLGRMLLKLQ NSIAPRYISA DWINSSFDSW AERCRNVNSA 120 ESVGLLKEEW VNSILWNDVN SLSSVPVQPT LGSEWKTWKQ DVMNWFSTPY SGYQVSLQIG 180 RERRKLQVHR ADTDTSLAGT KGSDHSITLE TSPGFSKNQN TVSALAIVPF EQESFREVHV 240 ETDLPSNLTD QRNEIVVEGT DSEILNSNGM ELTPIDDMAG EKIMEPGTKN KQCIAYVEAK 300 GRLCVRSPSD GDKYCCVHSR CLSSPGITKT CVGITIAGTR CKHHSLPDSP FCKKHRPSAE 360 TRRNLKRKHE GNCTPSEGLI CKDMVLLNDE IPLQVIPMSA NRGDCFLHKF PGKLVLSGNC 420 HNAMEEAPRC LGSPPYDNEY PCVQSPLWYF LYCEKHLPSW LKRGRYGKTR VISKEVFTEI 480 LRDCSSWEQK VHLHTACGIF HRLFNGILSN PVSKEFQFQR TMTEAAKDPS VGELLKRLIM 540 SEKERIKLVW GLDDDIDISS LMEGPSLVPT AINGRLDNGE FLDDRTQGNH WMDNHKKEAP 600 RLCSSFGCAI CRVSFTEKKL LENHVQERHQ GAKRSDHSIT LATIPGFSKN QDTVGALEIV 660 TPELENLREV PVETDLPCNL IDKWIEIVGQ AGDSEILNSN GMETTSIDAG TKNQQCVAYE 720 VKGRQSVRSA LRSARKAKKP VPIETPMCGG TTNAGNSCKH HSLPDSLFCK KHLPGAETRS 780 KLKGKHEASC TGSEGLICKD TGPLHVDPVL ASDGGRLYES LSLHPESTQM QRSCSFFTFC 840 PETCHQAYLF DNEFDDAKDV FGKPMRGRCP YDENGRIILE EGYLVYECNN MSRCNKTCAN 900 RILQNGIRVK LEVFKTEKKG WGVRAGEAIL RGTFICELLG EVLDGREAHD RRKRYGKEYC 960 SYFYDIDARF NDTGKMIEGQ GKYVIDATRY GNVSRFINSS CSPNLVSYNV FVESLDCKRS 1020 HIGLYASRDI ALGEELTFDY QGK

Sequence ? help Back to Top

Protein Sequence Length: 1043 aa Download sequence Send to blast

MLLVRPIDEF PQPTAYETHQ EALEIVKDLT VVRRFTMQDL ALSILYTLDQ LHSHALVETA  60
CDVMVWKELA MKASSCNAYS DLGRMLLKLQ NSIAPRYISA DWINSSFDSW AERCRNVNSA  120
ESVGLLKEEW VNSILWNDVN SLSSVPVQPT LGSEWKTWKQ DVMNWFSTPY SGYQVSLQIG  180
RERRKLQVHR ADTDTSLAGT KGSDHSITLE TSPGFSKNQN TVSALAIVPF EQESFREVHV  240
ETDLPSNLTD QRNEIVVEGT DSEILNSNGM ELTPIDDMAG EKIMEPGTKN KQCIAYVEAK  300
GRLCVRSPSD GDKYCCVHSR CLSSPGITKT CVGITIAGTR CKHHSLPDSP FCKKHRPSAE  360
TRRNLKRKHE GNCTPSEGLI CKDMVLLNDE IPLQVIPMSA NRGDCFLHKF PGKLVLSGNC  420
HNAMEEAPRC LGSPPYDNEY PCVQSPLWYF LYCEKHLPSW LKRGRYGKTR VISKEVFTEI  480
LRDCSSWEQK VHLHTACGIF HRLFNGILSN PVSKEFQFQR TMTEAAKDPS VGELLKRLIM  540
SEKERIKLVW GLDDDIDISS LMEGPSLVPT AINGRLDNGE FLDDRTQGNH WMDNHKKEAP  600
RLCSSFGCAI CRVSFTEKKL LENHVQERHQ GAKRSDHSIT LATIPGFSKN QDTVGALEIV  660
TPELENLREV PVETDLPCNL IDKWIEIVGQ AGDSEILNSN GMETTSIDAG TKNQQCVAYE  720
VKGRQSVRSA LRSARKAKKP VPIETPMCGG TTNAGNSCKH HSLPDSLFCK KHLPGAETRS  780
KLKGKHEASC TGSEGLICKD TGPLHVDPVL ASDGGRLYES LSLHPESTQM QRSCSFFTFC  840
PETCHQAYLF DNEFDDAKDV FGKPMRGRCP YDENGRIILE EGYLVYECNN MSRCNKTCAN  900
RILQNGIRVK LEVFKTEKKG WGVRAGEAIL RGTFICELLG EVLDGREAHD RRKRYGKEYC  960
SYFYDIDARF NDTGKMIEGQ GKYVIDATRY GNVSRFINSS CSPNLVSYNV FVESLDCKRS  1020
HIGLYASRDI ALGEELTFDY QGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5vsc_A	1e-37	868	1040	78	239	Histone-lysine N-methyltransferase EHMT2
5vsc_B	1e-37	868	1040	78	239	Histone-lysine N-methyltransferase EHMT2
5vse_A	1e-37	868	1040	78	239	Histone-lysine N-methyltransferase EHMT2
5vse_B	1e-37	868	1040	78	239	Histone-lysine N-methyltransferase EHMT2
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	361	367	RRNLKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj4g3v0901350.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT136497	0.0	BT136497.1 Lotus japonicus clone JCVI-FLLj-3E22 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027345403.1	0.0	histone-lysine N-methyltransferase SUVR5-like
TrEMBL	A0A444WSM6	0.0	A0A444WSM6_ARAHY; Uncharacterized protein
STRING	GLYMA16G25795.1	0.0	(Glycine max)