PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0934560.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bZIP
Protein Properties Length: 231aa    MW: 24791 Da    PI: 5.26
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0934560.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_173.92.3e-23149211163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+++v+ L +eN++L++el +l++e++kl+se+
  Lj4g3v0934560.1 149 ERELKRQKRKQSNRESARRSRLRKQAECEELQKRVEMLGNENQTLREELRKLSEECEKLTSEN 211
                      89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.6E-19143209No hitNo description
PRINTSPR000413.5E-5148164IPR001630cAMP response element binding (CREB) protein
PfamPF001703.9E-21149211IPR004827Basic-leucine zipper domain
SMARTSM003388.3E-22149213IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.507151214IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.53E-11152208No hitNo description
CDDcd147023.01E-18154204No hitNo description
PROSITE patternPS000360156171IPR004827Basic-leucine zipper domain
PRINTSPR000413.5E-5166186IPR001630cAMP response element binding (CREB) protein
PRINTSPR000413.5E-5186203IPR001630cAMP response element binding (CREB) protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MQQSTEIEAK GTNGKDRDSS KKLKGTSANT CAKAGESGKA GSGSGNDGNS HSAESGSDGS  60
SSASDENTNQ QESATNKKRS FDQMLVDGAN AQNNSAGAIS QSPVPGQPAT NLNIGMDLWN  120
ASSGAPGAVA TSAIMGREVV LSEQWIQDER ELKRQKRKQS NRESARRSRL RKQAECEELQ  180
KRVEMLGNEN QTLREELRKL SEECEKLTSE NSSIKEELDR LCGPETVANL G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165171RRSRLRK
2165172RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.550.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Found in both light and dark grown leaves.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0934560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1425550.0BT142555.1 Lotus japonicus clone JCVI-FLLj-16G5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027346028.11e-126G-box-binding factor 1-like isoform X1
RefseqXP_027346029.11e-126G-box-binding factor 1-like isoform X1
RefseqXP_027346030.11e-126G-box-binding factor 1-like isoform X2
SwissprotP427746e-64GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A371H2G61e-121A0A371H2G6_MUCPR; G-box-binding factor 1
STRINGXP_007156023.11e-116(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.12e-54G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]