PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0937730.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 525aa    MW: 55032.4 Da    PI: 8.1392
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0937730.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-056082123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C+k F r  nL+ H r H
  Lj4g3v0937730.1 60 FVCEICNKGFQRDQNLQLHRRGH 82
                     89*******************88 PP
2zf-C2H211.90.00071136158123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k +  +s+ k H +++
  Lj4g3v0937730.1 136 WKCEKCSKKYAVQSDWKAHSKVC 158
                      58*****************9877 PP
3zf-C2H211.70.00079166184523
                      TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                      dCg++Fsr++++ +H   +
  Lj4g3v0937730.1 166 DCGTVFSRRDSFITHRAFC 184
                      9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-55982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.54E-65982No hitNo description
SMARTSM003550.0176082IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9496082IPR007087Zinc finger, C2H2
PfamPF121718.4E-56082IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SMARTSM00355190101131IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.6E-4124157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.54E-6131156No hitNo description
SMARTSM00355140136156IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MPVDFDNVST PSGEAPSVSS SGNQPPQPTT KKKRNLPGMP DPEAEVIALS PKTLMATNRF  60
VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RTSKEVRKRV YVCPEPTCVH HDPSRALGDL  120
TGIKKHFCRK HGEKKWKCEK CSKKYAVQSD WKAHSKVCGT REYKCDCGTV FSRRDSFITH  180
RAFCDALAEE STRSQTQKAN SESESKVLTA DSSPPPAAAT AAAANASTTQ SNSGISSALQ  240
TQNLELPENP QQIREEPQAV VATAALNGSC SSSSCTTTIT ATTTSTSIAN GSGATNNSCS  300
VFASLFASST ASGSLHSQAQ PAFTDLIRAM GCPDRPADLS LPAPSSSEAI SLCLSTNHGP  360
SIFGTGGQLE YRQYMPSPQP PAMSATALLQ KAAQMDAAAT NASLLRGLGI VSSSSAASTS  420
SGQQDSLQWG QVKVERDSDG FPSGLGLGLP SDGGSGLKEL MMGTPTVFGD PKQTTLDFLG  480
LGMAVGGSSG GGISALMTSI SGGFDVTTSF GNGGEFSGKD IGRSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-35132193364Zinc finger protein JACKDAW
5b3h_F9e-35132193364Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.137370.0cell culture| protoplast
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}.
UniprotTISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0937730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0103710.0AP010371.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT05F06, TM0165, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027346346.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1-like
SwissprotQ9LVQ71e-176IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A0S3T4U70.0A0A0S3T4U7_PHAAN; Uncharacterized protein
STRINGXP_007156918.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-137indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]