PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1000010.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MIKC_MADS
Protein Properties Length: 213aa    MW: 25274.9 Da    PI: 10.182
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1000010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF885.2e-28959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     k+ien +nrqvtfskRrngi+KKA+EL  LCda+v++iifs++ k++ey+s
  Lj4g3v1000010.1  9 KFIENPTNRQVTFSKRRNGIFKKAHELTLLCDAKVSLIIFSKSHKMHEYIS 59
                     79***********************************************86 PP
2K-box584e-2078173799
            K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGed...LesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                       +l+  ++e++ ++ ++L + +++L+r++R+++Ge+   L++Ls+++L+ Le+++ +s +kiR++K +++++ +++ +kk ++l++ n +L ++
  Lj4g3v1000010.1  78 IDLWRDHYEKMLENKKRLTDINNKLRRQIRQRIGEGmnnLDDLSFQQLRTLEDDMVSSTEKIRERKLHVIKTRTDTCRKKVRSLEQMNGNLLQE 171
                      459*******************************973335678************************************************999 PP

            K-box  98 le 99 
                      l+
  Lj4g3v1000010.1 172 LD 173
                      86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.2E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.16161IPR002100Transcription factor, MADS-box
CDDcd002654.54E-37277No hitNo description
SuperFamilySSF554555.62E-33295IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.7E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-263859IPR002100Transcription factor, MADS-box
PfamPF014861.4E-1583172IPR002487Transcription factor, K-box
PROSITE profilePS5129713.15585178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGRGKLEIKF IENPTNRQVT FSKRRNGIFK KAHELTLLCD AKVSLIIFSK SHKMHEYISP  60
GLTTKKVIDQ YQRTLGDIDL WRDHYEKMLE NKKRLTDINN KLRRQIRQRI GEGMNNLDDL  120
SFQQLRTLED DMVSSTEKIR ERKLHVIKTR TDTCRKKVRS LEQMNGNLLQ ELDSRTVALA  180
NGVSNFHAFN EEYNHLNRHQ HVEEFDSYYL RLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-15171169MEF2 CHIMERA
6byy_B5e-15171169MEF2 CHIMERA
6byy_C5e-15171169MEF2 CHIMERA
6byy_D5e-15171169MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens, petals and carpels (PubMed:17920788). Expressed in fruits and seeds (PubMed:17920788). {ECO:0000269|PubMed:17920788}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1000010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020216956.11e-111floral homeotic protein DEFICIENS isoform X1
RefseqXP_020216957.11e-111floral homeotic protein DEFICIENS isoform X2
SwissprotQ003J24e-82TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A151TIP01e-110A0A151TIP0_CAJCA; Floral homeotic protein DEFICIENS
TrEMBLA0A371EYS11e-110A0A371EYS1_MUCPR; Floral homeotic protein DEFICIENS (Fragment)
STRINGXP_007157954.11e-110(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.17e-62MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]