PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1062140.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 226aa    MW: 24968.3 Da    PI: 9.9395
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1062140.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-051535323
                     ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                     C +C+k F++ + L+ H r+H
  Lj4g3v1062140.1 15 CAICKKAFTSVYALNGHTRMH 35
                     ********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.56E-61138No hitNo description
Gene3DG3DSA:3.30.160.600.0011236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.6E-51336IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1981340IPR007087Zinc finger, C2H2
PROSITE patternPS0002801537IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MAADNHNNVQ RFFLCAICKK AFTSVYALNG HTRMHSHSQK GNVVTAAKTN NNVFSVKTCN  60
GGLSERSSTT KPSFPTAKTT LFPQTLKRRR EITPCGNIWS GRRFNIAAAM AAADGDVDTF  120
CHSSSAVERS GVYLSDGSVF RSWPLSCKRI RKPRLSPRRR RRGNSCSEVE VDPLMLEAAE  180
TLMLLANGGD FCGDQAEFSS APEEQGNSTK RVKRMMMQGE EDMIMS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.110688e-56pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1062140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097010.0AP009701.1 Lotus japonicus genomic DNA, clone: LjT31G10, TM1742, complete sequence.