PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1221570.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 180aa    MW: 19338.5 Da    PI: 9.8502
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1221570.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-1762111255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+++Aa+a++ a++ ++g
  Lj4g3v1221570.1  62 TYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFPTPDMAARAHDVAALTIKG 111
                      69****998.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.2E-1262111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-3162120IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-2162120IPR016177DNA-binding domain
SMARTSM003801.5E-3562125IPR001471AP2/ERF domain
PROSITE profilePS5103222.86662119IPR001471AP2/ERF domain
PRINTSPR003674.6E-106374IPR001471AP2/ERF domain
CDDcd000181.15E-3063121No hitNo description
PRINTSPR003674.6E-1085101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MDKEESVLPD SELQPATTSL SLTIIATTSS SSSSAEEVTN MVKKNKNEKK GVKRSNDGKH  60
PTYRGVRMRQ WGKWVSEIRE PRKKSRIWLG TFPTPDMAAR AHDVAALTIK GSGAYLNFPE  120
LAAELPRPAS TSPKDIQVAA AQGGAPDFTP HPGSGGEAAS TSSXFLLESQ SQARIIIVEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-17591201173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1221570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7879710.0KC787971.1 Lotus corniculatus AP2/ERF (ERF011) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019446074.11e-63PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ9LYD33e-49DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A140WWF43e-87A0A140WWF4_LOTCO; AP2/ERF
STRINGGLYMA05G04920.13e-53(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.15e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]