PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1330190.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 131aa    MW: 15727.4 Da    PI: 10.7135
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1330190.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.12e-1037130698
                      ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEE.EE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWev.kliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      t+s ++  + l lp+++++++  ++ e  ++ l+ e  ++W + kl++rk+ ++   + l++   +Fv++n+L e+D +vF+++g s+  l+v+
  Lj4g3v1330190.1  37 TSSVAGGGQTLPLPRPYVRDFLDQSWE--KVLLKKEGDQEWYIcKLCWRKRNDKltdCHLGEEFYKFVSDNHLAENDKLVFSHSG-SNNVLHVR 127
                      445555568899******999666445..79999**9****9747777666666889999**********************988.66668888 PP

                      EE- CS
               B3  96 vfr 98 
                      + r
  Lj4g3v1330190.1 128 IQR 130
                      866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023622.7E-836130IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-1036127IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-736128No hitNo description
Gene3DG3DSA:2.40.330.109.0E-938130IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MKMLWLRKRK RLWQMALKLL QLARFRMQGT PLRRLFTSSV AGGGQTLPLP RPYVRDFLDQ  60
SWEKVLLKKE GDQEWYICKL CWRKRNDKLT DCHLGEEFYK FVSDNHLAEN DKLVFSHSGS  120
NNVLHVRIQR H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1511LRKRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1330190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0103521e-142AP010352.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT15P01, TM1974, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI3SYK99e-24I3SYK9_LOTJA; Uncharacterized protein