PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1333590.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 261aa    MW: 29006.7 Da    PI: 4.817
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1333590.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-174596155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr +  +++Wv+e+r+p   + k++r++lg++ t+e+Aa+a++ a+++l+g
  Lj4g3v1333590.1 45 PVYRGVRSRN-NNKWVCEVRVP---NdKTTRIWLGTHPTPEMAARAHDVAALALRG 96
                     68****9766.9*********9...6678*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.0E-124596IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-2946106IPR001471AP2/ERF domain
SMARTSM003805.9E-2346110IPR001471AP2/ERF domain
PROSITE profilePS5103220.62646104IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-1946106IPR016177DNA-binding domain
PRINTSPR003672.4E-64758IPR001471AP2/ERF domain
CDDcd000181.26E-2647106No hitNo description
PRINTSPR003672.4E-67086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MNSIDTEQYS GGSSSEAGSS NLHELASGRP KKCAGRRVFK ETRHPVYRGV RSRNNNKWVC  60
EVRVPNDKTT RIWLGTHPTP EMAARAHDVA ALALRGKSAC LNFADSAWRV PPLLPASNSA  120
KELRRVAIEV AHAFAAEDCC NGQQQQQTYN NVCSSGDNFG VGESVMEDNN NNNNKTNNDN  180
DNNNNGNPLH LEGLCLEFDE VLQGVSSGFQ EQDLQDWLRN MEDEPLRSPQ HPFEGPSYGT  240
ECWSIDDVDV EHEVSLWSFS L
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1333590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155567.14e-77hypothetical protein PHAVU_003G212800g
TrEMBLV7CF768e-76V7CF76_PHAVU; DREB1F protein
STRINGXP_007155567.11e-76(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.14e-39ERF family protein