PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1334860.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 234aa    MW: 26235.4 Da    PI: 6.0493
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1334860.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.37.1e-1754104154
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                      + y+GVr++  + +Wv+e r+p+e  k+ r++lg++ t+e+Aa+a++ a+++l+
  Lj4g3v1334860.1  54 PVYRGVRRRN-NDKWVCEARVPNE--KNGRIWLGTYPTPEMAARAHDVAALALR 104
                      68*****887.8*********944..568**********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-1254104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-2855115IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-1955115IPR016177DNA-binding domain
SMARTSM003801.9E-2055119IPR001471AP2/ERF domain
PROSITE profilePS5103220.83755113IPR001471AP2/ERF domain
CDDcd000189.03E-2456115No hitNo description
PRINTSPR003678.7E-75667IPR001471AP2/ERF domain
PRINTSPR003678.7E-77995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MNSLEESSYE HYSCSSSETT SSSSNRNEEA IITLASAKPK RRAGRRIFKE TRHPVYRGVR  60
RRNNDKWVCE ARVPNEKNGR IWLGTYPTPE MAARAHDVAA LALRVKSACL NFADSAWRIP  120
PLLPASNCKK EIRRVAGEVA EAFVVEDIDG DEVCSSNSVN ENEKPLQLKG LCLDIEVLGG  180
VSSGLQAEQE LHDWLRRMVD EPLRSPQHAF VGSYGWDWSD VQGDTEVSLW SFAI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.215180.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1334860.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155567.13e-79hypothetical protein PHAVU_003G212800g
SwissprotQ9LN866e-51DRE1F_ARATH; Dehydration-responsive element-binding protein 1F
TrEMBLV7CF766e-78V7CF76_PHAVU; DREB1F protein
STRINGXP_007155567.11e-78(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63030.23e-39ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]
  3. Song GQ,Gao X
    Transcriptomic changes reveal gene networks responding to the overexpression of a blueberry DWARF AND DELAYED FLOWERING 1 gene in transgenic blueberry plants.
    BMC Plant Biol., 2017. 17(1): p. 106
    [PMID:28629320]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]