PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj4g3v1600420.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

LBD

Protein Properties

Length: 229aa MW: 26302.6 Da PI: 4.2394

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj4g3v1600420.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	22.1	4.2e-07	1	43	58	100
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 m+s++ +A+ r + Pv+G+++ i +lq q+ +++el+++ ++ Lj4g3v1600420.1 1 MDSIIIQANYRDKYPVHGCCEEIGRLQYQIWLVEEELHAVYQQ 43 79***********************************999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	6.9E-5	1	40	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MDSIIIQANY RDKYPVHGCC EEIGRLQYQI WLVEEELHAV YQQLEMCRQQ QQHQQHNDGM 60 ALPDDVTSQL ELGMAPRSNN ALQLFNHPPP QQQSYNTVAA ISQQHSYSNS NSVDYNNNSL 120 YMDSKDNVTN PLWVQYQYQN NNSNDSVAMQ TQLVASQQPL AIQQEVVEDY DEMHPFFDTV 180 DDRQSYVYSK EAYESSSEES LKDTRKGSEH VSENELKSAA ACFSLTSVN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.6003	1e-115	flower

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj4g3v1600420.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020225931.1	1e-112	LOB domain-containing protein 27
TrEMBL	A0A371F2W3	1e-116	A0A371F2W3_MUCPR; LOB domain-containing protein 27 (Fragment)
STRING	XP_004508794.1	1e-102	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4415	29	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	2e-10	LOB domain-containing protein 27