PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1645600.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family M-type_MADS
Protein Properties Length: 83aa    MW: 9468.24 Da    PI: 10.8289
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1645600.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.34.7e-241053245
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     + e++snr+vt+skR+ gilKKA+ELS+LCd+++ +++fs+tgk
  Lj4g3v1645600.1 10 KLESTSNRHVTYSKRKSGILKKAKELSILCDVDIILLMFSPTGK 53
                     679***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.57E-25181IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.418153IPR002100Transcription factor, MADS-box
SMARTSM004328.9E-29160IPR002100Transcription factor, MADS-box
CDDcd002661.42E-23282No hitNo description
PRINTSPR004042.2E-18323IPR002100Transcription factor, MADS-box
PfamPF003193.1E-211154IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MGRVKLKIKK LESTSNRHVT YSKRKSGILK KAKELSILCD VDIILLMFSP TGKPTLLHGE  60
RSNIEEVIAK FAQLSPQERA KRY
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1645600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025982168.13e-48LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL65
SwissprotQ7X9I04e-40AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLA0A072USA53e-46A0A072USA5_MEDTR; MADS-box transcription factor family protein
TrEMBLA0A1S3UKR18e-47A0A1S3UKR1_VIGRR; LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL65
TrEMBLA0A445G4U35e-49A0A445G4U3_GLYSO; Agamous-like MADS-box protein AGL65 isoform B
TrEMBLB7FM895e-47B7FM89_MEDTR; Uncharacterized protein
STRINGGLYMA17G10941.15e-47(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.12e-42AGAMOUS-like 65
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]