PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj4g3v1646660.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

NAC

Protein Properties

Length: 163aa MW: 19133.1 Da PI: 9.3014

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj4g3v1646660.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	183.4	5.5e-57	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL kkv + ++++ ++i evd++k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ Lj4g3v1646660.1 16 LPPGFRFHPTDEELISHYLYKKVIDIEFSA-RAIGEVDLNKCEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFR 108 79************************99.89***********888999************************************ PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfykgrapkgek++Wvmheyrle Lj4g3v1646660.1 109 -GKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 142 .999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.97E-62	12	153	IPR003441	NAC domain
PROSITE profile	PS51005	55.66	16	163	IPR003441	NAC domain
Pfam	PF02365	3.9E-30	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MENISVLSKE EDQMDLPPGF RFHPTDEELI SHYLYKKVID IEFSARAIGE VDLNKCEPWD 60 LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIFRGK SLVGMKKTLV 120 FYKGRAPKGE KSNWVMHEYR LEGKFSVHNL PKTAKVIDCP VFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-53	13	141	14	142	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-53	13	141	14	142	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-53	13	141	14	142	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-53	13	141	14	142	NO APICAL MERISTEM PROTEIN
3swm_A	7e-53	13	141	17	145	NAC domain-containing protein 19
3swm_B	7e-53	13	141	17	145	NAC domain-containing protein 19
3swm_C	7e-53	13	141	17	145	NAC domain-containing protein 19
3swm_D	7e-53	13	141	17	145	NAC domain-containing protein 19
3swp_A	7e-53	13	141	17	145	NAC domain-containing protein 19
3swp_B	7e-53	13	141	17	145	NAC domain-containing protein 19
3swp_C	7e-53	13	141	17	145	NAC domain-containing protein 19
3swp_D	7e-53	13	141	17	145	NAC domain-containing protein 19
4dul_A	7e-53	13	141	14	142	NAC domain-containing protein 19
4dul_B	7e-53	13	141	14	142	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj4g3v1646660.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT094159	1e-144	BT094159.1 Soybean clone JCVI-FLGm-18C12 unknown mRNA.
GenBank	EU661925	1e-144	EU661925.1 Glycine max NAC domain protein (NAC28) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027331675.1	1e-108	NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-100	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	C6T9I7	1e-104	C6T9I7_SOYBN; Uncharacterized protein (Fragment)
TrEMBL	R4N7I9	1e-104	R4N7I9_JATCU; NAC transcription factor 002
STRING	GLYMA17G10970.1	1e-105	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-102	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]