PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1719700.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 490aa    MW: 56081.8 Da    PI: 4.5605
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1719700.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.001158179122
                      EEETTTTEEESSHHHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                      + C  Cgk F++  + k+H ++
  Lj4g3v1719700.1 158 FYCVLCGKKFKSEKQWKNHEQS 179
                      78*****************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.83E-15145200No hitNo description
SMARTSM004519.1E-6155189IPR003604Zinc finger, U1-type
PfamPF121716.7E-11158183IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.27158182IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182158187IPR007087Zinc finger, C2H2
PROSITE patternPS000280160182IPR007087Zinc finger, C2H2
SMARTSM003556.4460484IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.099460489IPR007087Zinc finger, C2H2
PROSITE patternPS000280462484IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MGLPVPQAPL MGNLDSPYAQ VTAFYGYWMG FSSVMDFCWA DEYDVMAGPN RRSRRLMEEE  60
NNKVRRKAKK EYNETVRRLA DFAKKRDKRV IDMKVKKVAE MEKKKEEERE KKKRLEKEKK  120
ERAMAYEEPE WAKVEEGEEA SWFEEVEEEE EKKDENEFYC VLCGKKFKSE KQWKNHEQSK  180
KHKEKVAEFK DSLADEEDLE AEVEGEEEDV GAENGRPESE EGGIEVNDDQ LEEVDDLEER  240
IRDGLNVAEE ETRNEVKLND DGDGNDDDDD DDDDFDATHS KESEKADVSV DFDDDENGFL  300
EAMVAGRKSK KPGASTQKPK ASVTPSQTEN ENENVDENEN ENKNENDGVG FMEYNNQKST  360
RKKRRAKKEK GRVDEPHGAA FSANYENRNS DGNNNSFAEE SSSQYSVENE ENGKENEQVG  420
RDKKSSNQPV DKKGTSKDAK TRAKTSSKGR KAKASKNLDN ICEACGEEFE SRNKLHKHLG  480
DSGHASIKGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360367RKKRRAKK
2361366KKRRAK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1719700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1353730.0BT135373.1 Lotus japonicus clone JCVI-FLLj-21E2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019460506.10.0PREDICTED: DNAJ protein JJJ1 homolog
TrEMBLA0A4P1RU770.0A0A4P1RU77_LUPAN; Uncharacterized protein
TrEMBLI3S4H60.0I3S4H6_LOTJA; Uncharacterized protein
STRINGGLYMA05G00445.11e-175(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65511922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.12e-64DNAJ heat shock N-terminal domain-containing protein