PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1770570.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 232aa    MW: 26007.4 Da    PI: 9.5666
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1770570.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.77.9e-1564114255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++ GVr+++ +grW AeI+d s+  ++ r++lg+f+ a eAa a++ a++ l+g
  Lj4g3v1770570.1  64 KFLGVRQRP-SGRWIAEIKDSSS--QKLRVWLGTFDRAVEAALAYDSAARLLRG 114
                      789******.7*********432..36***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.46E-2763124No hitNo description
Gene3DG3DSA:3.30.730.104.3E-2764123IPR001471AP2/ERF domain
PROSITE profilePS5103219.26964122IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-1864123IPR016177DNA-binding domain
SMARTSM003803.1E-3164128IPR001471AP2/ERF domain
PfamPF008474.9E-965114IPR001471AP2/ERF domain
PRINTSPR003676.9E-96576IPR001471AP2/ERF domain
PRINTSPR003676.9E-9104124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MFLHAKIQPL SPTLMENKDK STSPPQSENQ NKNLPLMPNE IDRSYENREK KKIPQTENKC  60
QQKKFLGVRQ RPSGRWIAEI KDSSSQKLRV WLGTFDRAVE AALAYDSAAR LLRGKNAKTN  120
FPNTHHEEDY YCSSILGKNP RAYQLLHQHA VMKKNHHALI SSSVFSSIPW KNQIMMRGEE  180
HDALVEETIV CSVASVNPEE GSTGSSGISF GSSKVYSSVV VAPSFSASQC QT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1663122160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A7e-16601251075Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1770570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028210113.12e-83ethylene-responsive transcription factor ERF084-like
TrEMBLC6TGV62e-88C6TGV6_SOYBN; Uncharacterized protein
STRINGGLYMA05G07690.25e-85(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123492734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-24related to AP2 11