PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2046140.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family CO-like
Protein Properties Length: 369aa    MW: 40170.1 Da    PI: 6.2369
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2046140.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.61.1e-071555438
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                     + C+ ++   + lfC+ ++ +lC +C +++H+       H+
  Lj4g3v2046140.1 15 KPCDSCKLASAALFCRPDSAFLCISCDSKIHSVnklasrHE 55
                     68******99*********************4356666666 PP
2zf-B_box28.72.7e-0957102342
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                       ++C+ +e+ +++  C+ +   lC +C + +H+       H++vp+
  Lj4g3v2046140.1  57 VWMCEVCEQAPASVTCKADAAALCVTCDSDIHSAnplarrHERVPV 102
                      689*****************************66899999*99986 PP
3CCT69.96.4e-24297341145
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                      Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++e
  Lj4g3v2046140.1 297 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSE 341
                      9*****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.4E-111259IPR000315B-box-type zinc finger
PROSITE profilePS5011910.0541259IPR000315B-box-type zinc finger
PfamPF006431.7E-61456IPR000315B-box-type zinc finger
CDDcd000213.00E-61659No hitNo description
PROSITE profilePS5011911.00755102IPR000315B-box-type zinc finger
PfamPF006432.9E-757102IPR000315B-box-type zinc finger
CDDcd000218.52E-958102No hitNo description
SMARTSM003361.7E-1060102IPR000315B-box-type zinc finger
PROSITE profilePS5101716.787297339IPR010402CCT domain
PfamPF062035.6E-18297339IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGLEGLRSGW SVPPKPCDSC KLASAALFCR PDSAFLCISC DSKIHSVNKL ASRHERVWMC  60
EVCEQAPASV TCKADAAALC VTCDSDIHSA NPLARRHERV PVEPFFDSAE SIVKSSSAAA  120
AATAASFGFV VPTDEAFASH DDADAAAWLM PDPNFGSKLI DAPDVKSREM FFSELDPFLD  180
FDYTNSFQNN NNHNGGNDSV VPVQTKPLPP HPAPMMNHHT EGCFDIDFCR SKLSSSFNYP  240
SQSLSQSVSS SSLDVGVVPD GNAVSDMSYL NSSDSSGMVV SGGGGSQPAT QLCGMDREAR  300
VLRYREKRKN RKFEKTIRYA SRKAYAETRP RIKGRFAKRS EIDSEVDRLY SPVMTGSLMV  360
DSPFVVPTF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.4450.0cell culture| floral bud| pod| protoplast| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2046140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097402e-84AP009740.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT14B18, TM1868, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507812.10.0zinc finger protein CONSTANS-LIKE 5 isoform X1
SwissprotQ9FHH81e-117COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A371G5960.0A0A371G596_MUCPR; Zinc finger protein CONSTANS-LIKE 5 (Fragment)
STRINGXP_004507812.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.12e-95CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]