PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2120330.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family AP2
Protein Properties Length: 345aa    MW: 38083.1 Da    PI: 7.7851
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2120330.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2483e-1599150155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Lj4g3v2120330.2  99 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 150
                      57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.2E-61370IPR001471AP2/ERF domain
CDDcd000187.10E-131365No hitNo description
PROSITE profilePS5103211.7191564IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-102865IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-93164IPR001471AP2/ERF domain
CDDcd000185.83E-2699160No hitNo description
PfamPF008473.8E-1099150IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-1899160IPR016177DNA-binding domain
SMARTSM003801.5E-33100164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-18100159IPR001471AP2/ERF domain
PROSITE profilePS5103219.045100158IPR001471AP2/ERF domain
PRINTSPR003679.9E-5101112IPR001471AP2/ERF domain
PRINTSPR003679.9E-5140160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MTLLCFFFSY LVPWRMIAHP WDPLLAHYVV SVYLGGYDKE EKAARAYDLA ALKYWGPTTT  60
TNFPICNYEK ELEEMKNMTR QEFVASLRRK SSGFSRGASI YRGVTRHHQH GRWQARIGRV  120
AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFDMS RYDVKSIANS NLPIGGLSSK  180
NNKNSTADSH SDQSKSDERD PSSASSSGNF TPSSSNTLSF AIPIKQDTNT TTSDYYSTLL  240
GFHNNNTVPF HMDYSSGAPS SNNNNDNSAA QFLSSGILMQ QQQHGGSSST VSSSSSSVVT  300
LATPVFSLNS YENGYGNWMG PTLHNSTFQS HAKPSLFQTP IFGME
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.126630.0cell culture| protoplast
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Present in inflorescence meristem and later in young floral mersitems. Expressed in sepal, petal, stamen and carpel primordia. In petal, progressively confined to petal margin and epidermal cells. Restricted to sporogenous tissue in the stamen and to the medial ridge of the carpel. Present in tissues that develop from this ridge, such as placenta and ovule primordia. In ovules, first expressed in distal part of the funiculus and the outer integument, before being confined to the funiculus. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2120330.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM7758571e-141HM775857.1 Glycine max aintegumenta-like 5 mRNA, complete cds.
GenBankKT0310931e-141KT031093.1 Glycine max clone HN_CCL_134 AP2-EREBP transcription factor (Glyma17g07010.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027331781.11e-151AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-100AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A0R0F9G41e-150A0A0R0F9G4_SOYBN; Uncharacterized protein
STRINGGLYMA13G00950.11e-147(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.12e-91AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]