PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2179250.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NF-YA
Protein Properties Length: 191aa    MW: 20583.2 Da    PI: 10.4871
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2179250.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.32.3e-324399158
        CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                     d p+YVNaKQy++Il+RRq+Rakle+++kl +ksrkpylheSRh+hAl+R RgsgGrF
  Lj4g3v2179250.1 43 DGPIYVNAKQYHGILRRRQSRAKLEARNKL-IKSRKPYLHESRHRHALNRVRGSGGRF 99
                     57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.0E-3541102IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.17842102IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.1E-254567IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.7E-284599IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068604767IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.1E-257699IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MACAPYPYGD PFSGVSLVAY GPQVSMPGLA SSRIALPLDL AEDGPIYVNA KQYHGILRRR  60
QSRAKLEARN KLIKSRKPYL HESRHRHALN RVRGSGGRFL SAKQKQQSNA ERVNVYLRKD  120
ASEVESHASR TGKSASSITN CSGVTSVSSN NVNIWQPELN FLGNSANMGA ALHCSGGLSF  180
GGGTQQCPVG Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-2443105264NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2179250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020224880.15e-90nuclear transcription factor Y subunit A-7
RefseqXP_020224881.15e-90nuclear transcription factor Y subunit A-7
TrEMBLA0A445EP312e-88A0A445EP31_ARAHY; Uncharacterized protein
TrEMBLM4SZZ42e-88M4SZZ4_ARAHY; Nuclear transcription factor Y subunit A-3
STRINGXP_007154608.14e-88(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.48e-40nuclear factor Y, subunit A8