PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2191500.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 190aa    MW: 21131.3 Da    PI: 8.4697
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2191500.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.23.4e-1468157299
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      +k ++ps+v+   +l lpkkf+e +  +k  ++ + ledes + ++ k+     +  + l++GW++F  a++L e D++vF+l++ ++f  +v 
  Lj4g3v2191500.1  68 VKHMLPSHVTGGFWLGLPKKFCELYL-PK-ADTFIALEDESRELYQAKY--LAEK--VGLSGGWRGFSIAHNLLEMDVLVFHLIQPHKF--KVY 153
                      68899*****************8884.43.4468***************..4444..55*************************98888..888 PP

                      EE-S CS
               B3  96 vfrk 99 
                      ++r+
  Lj4g3v2191500.1 154 IVRS 157
                      8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-1859157IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.79E-2160157IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-2365156No hitNo description
SMARTSM010192.4E-1867158IPR003340B3 DNA binding domain
PROSITE profilePS5086310.5667158IPR003340B3 DNA binding domain
PfamPF023622.7E-1268157IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MVEAVLKTPS DRENPSKGTS RNAQKKRKSG GESSICSRST FNNEAQLAAV ERAKEIQASL  60
SPEFPSIVKH MLPSHVTGGF WLGLPKKFCE LYLPKADTFI ALEDESRELY QAKYLAEKVG  120
LSGGWRGFSI AHNLLEMDVL VFHLIQPHKF KVYIVRSQKP DEVDGALGLL KLDKCEKAPK  180
NELDMESIAG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2191500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020237115.12e-71B3 domain-containing protein Os01g0234100 isoform X4
TrEMBLA0A151RRB32e-68A0A151RRB3_CAJCA; B3 domain-containing protein Os01g0234100 family (Fragment)
STRINGGLYMA01G45623.11e-66(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2714522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-44B3 family protein