PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj4g3v2192550.2

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Protein Properties

Length: 167aa MW: 18772.7 Da PI: 9.1512

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj4g3v2192550.2	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.2	9.7e-16	44	133	2	99
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +k + ps+v+ +l+l+ kf++ h +k ++ +tledesg+ +e k+i +++ l++GW +F a++L e D+++F+l++ s+f +v Lj4g3v2192550.2 44 LKCMHPSHVSGAFWLSLSTKFCQMHL-PK-ADTIITLEDESGELYETKYIA----DKVALSGGWMRFSIAHNLHEMDVLIFHLVKPSKF--KVY 129 58899***************8884.44.4569***********43....3467**********************998888..888 PP EE-S CS B3 96 vfrk 99 ++r+ Lj4g3v2192550.2 130 IVRS 133 8775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.4E-20	35	134	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.3E-22	36	133	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.08E-23	41	132	No hit	No description
PROSITE profile	PS50863	10.969	43	134	IPR003340	B3 DNA binding domain
SMART	SM01019	2.1E-15	43	134	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.0E-13	44	133	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MSAINRNPPK KRKSSTFNYE AQSAALQRAK EIQAKLSPEF PSLLKCMHPS HVSGAFWLSL 60 STKFCQMHLP KADTIITLED ESGELYETKY IADKVALSGG WMRFSIAHNL HEMDVLIFHL 120 VKPSKFKVYI VRSQGSDEVD GALGMLKLDK CRKTNDEVSS VLDAKQV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj4g3v2192550.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020237115.1	3e-76	B3 domain-containing protein Os01g0234100 isoform X4
Swissprot	Q9FMZ4	5e-36	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A151RRB3	7e-74	A0A151RRB3_CAJCA; B3 domain-containing protein Os01g0234100 family (Fragment)
STRING	GLYMA01G45623.1	6e-62	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	2e-38	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]