PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2312400.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Trihelix
Protein Properties Length: 240aa    MW: 26006.4 Da    PI: 9.3775
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2312400.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.37.1e-1751136186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W++  v +L+ea++ ++   +r+klk+++Weev+k++      ++  ++++qCk+k+e+++kry+ + +++ +      s++p++++l+
  Lj4g3v2312400.1  51 EWSEGAVCTLLEAYEAKWVLRNRAKLKGQDWEEVAKHVssraNNTKSPKTQTQCKNKIESMKKRYRSESATATDA----ASSWPLYSRLD 136
                      5*************************************88777777889999********************984....557*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-2049137No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MENKVENQEH HHPASLLPNI HSTITAKEES PRKAIGGGGS GGGGDRLKRD EWSEGAVCTL  60
LEAYEAKWVL RNRAKLKGQD WEEVAKHVSS RANNTKSPKT QTQCKNKIES MKKRYRSESA  120
TATDAASSWP LYSRLDVLLR GTGPVSPLPQ PQTAATAAPS QSPHPSNNHA LMLLEPSLAV  180
SQAPYEPPPP PVAPPPAATA QNSYGSNGVD KLAKVDFSLV SFLLHFLIMD FTISRGFLPL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.109311e-173pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2312400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1402160.0BT140216.1 Lotus japonicus clone JCVI-FLLj-20G23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027342812.17e-92trihelix transcription factor ASIL1-like
TrEMBLI3SIB91e-177I3SIB9_LOTJA; Uncharacterized protein
STRINGXP_007148925.11e-83(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-50sequence-specific DNA binding transcription factors