PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2312410.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Trihelix
Protein Properties Length: 138aa    MW: 15133.8 Da    PI: 9.9455
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2312410.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix40.19.7e-1351114160
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkr 60 
                      +W++  v +L+ea++ ++   +r+klk+++Weev+k++      ++  ++++qCk+k+e+++kr
  Lj4g3v2312410.1  51 EWSEGAVCTLLEAYEAKWVLRNRAKLKGQDWEEVAKHVssraNNTKSPKTQTQCKNKIESMKKR 114
                      5*************************************88777777889999**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-1449127No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MENKVENQEH HHPASLLPNI HSTITAKEES PRKAIGGGGS GGGGDRLKRD EWSEGAVCTL  60
LEAYEAKWVL RNRAKLKGQD WEEVAKHVSS RANNTKSPKT QTQCKNKIES MKKRTCVTTS  120
TATNSGNSST FSITTPQQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.109311e-34pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2312410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1402160.0BT140216.1 Lotus japonicus clone JCVI-FLLj-20G23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027342812.15e-52trihelix transcription factor ASIL1-like
TrEMBLI3SIB92e-72I3SIB9_LOTJA; Uncharacterized protein
STRINGXP_007148925.14e-51(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.15e-42sequence-specific DNA binding transcription factors