PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2313490.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ZF-HD
Protein Properties Length: 189aa    MW: 21622.6 Da    PI: 8.5005
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2313490.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer66.54.8e-211572258
      ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                     ++v+Y eC++NhAasl    +DGC+Ef++++ +e +t++a+ Ca CgCH nFH +++ 
  Lj4g3v2313490.1 15 QEVVYLECKRNHAASLNRVCYDGCQEFLKASVDEsNTKDAMLCAVCGCHQNFHLQHTM 72
                     6899************************9988887899***************88765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.1E-171770IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-91767IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152318.5091970IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.6E-161968IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.33E-9116182IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-15118183IPR009057Homeodomain-like
TIGRFAMsTIGR015651.2E-16121177IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MSDAEINFPP PGFEQEVVYL ECKRNHAASL NRVCYDGCQE FLKASVDESN TKDAMLCAVC  60
GCHQNFHLQH TMYTPKAQSQ TRNTPNIGSS LVGPSDPHVE FRVSAENNPE NERIVMLPKP  120
KRKKRTTFTV HLRNRMTEFA NRIGWTPKGT KREEIDNFCL DIGISHTTFL VWLSNHRPRA  180
MKKNTEMAN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2313490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097660.0AP009766.1 Lotus japonicus genomic DNA, clone: LjT40J14, TM1926, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027338063.13e-50zinc-finger homeodomain protein 5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15282511
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42780.18e-22homeobox protein 27