PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2376270.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Trihelix
Protein Properties Length: 321aa    MW: 35986.6 Da    PI: 9.7157
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2376270.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.81.9e-2042132186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                      +W+ +e+ aLi+a+r+++ +l+rg+lk+ +W++v++++     e+   ++p+qC++k+e+l+kry+ + +++++   s+ +s++++f+ ++
  Lj4g3v2376270.1  42 CWSPDETFALIDAYRDKWYSLGRGNLKASHWQDVADAVshrcPEKTPAKTPIQCRHKMEKLRKRYRTEIQRARSLpISRFTSSWAHFSLMD 132
                      7*******************************99999877778888899*************************9669999******9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.2E-2041134No hitNo description
PROSITE profilePS500906.05143103IPR017877Myb-like domain
SMARTSM005954.1E-950139IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MASPPHSSPP PDPPSALPLA LIPIPPPPTA TPTSSRRLPP PCWSPDETFA LIDAYRDKWY  60
SLGRGNLKAS HWQDVADAVS HRCPEKTPAK TPIQCRHKME KLRKRYRTEI QRARSLPISR  120
FTSSWAHFSL MDSMEKGPSP VKPEIDSDHS PHHDDNNNDD HDQDFYGGND GHGSSTRSLN  180
KLYKNGFSSG GFRIRIPTGS GAAQPGPKLF GFGKVANQKF NANLNHNASN DHEARDSGKK  240
RERDPVGEVV SAIKVLGDGF VRMEQMKMEM AKEIEMMRIE TEMKRTEMIL ESQQRIVESF  300
ARAISENNKK KNMRVSSPQE P
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.61080.0floral bud| flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2376270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0080490.0AP008049.3 Lotus japonicus genomic DNA, chromosome 4, clone: LjT45O15, TM1401, complete sequence.
GenBankAP0120310.0AP012031.1 Lotus japonicus genomic DNA, clone: LjT38A16, TM2613, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532535.11e-135trihelix transcription factor ASIL2
RefseqXP_028242912.11e-135trihelix transcription factor ASIL2-like
TrEMBLA0A445JA551e-134A0A445JA55_GLYSO; Protein FIP2 isoform A
TrEMBLI1KQI51e-134I1KQI5_SOYBN; Uncharacterized protein
STRINGGLYMA08G05630.11e-135(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46382838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.15e-70Trihelix family protein