PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2400600.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family M-type_MADS
Protein Properties Length: 151aa    MW: 17235 Da    PI: 9.6835
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2400600.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.82.8e-13645342
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     i ++  r++++ kR++ i+KK +EL +LC++e++ ii s+
  Lj4g3v2400600.1  6 ITDDKARKISYNKRKKNIIKKVSELTTLCGIEACAIISSP 45
                     889999*******************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.713144IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-11155IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.81E-19278IPR002100Transcription factor, MADS-box
PfamPF003193.0E-14645IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MKLAYITDDK ARKISYNKRK KNIIKKVSEL TTLCGIEACA IISSPFDSKP EIWPDVEGAK  60
KVVERYQNTP VKKQNMTLNQ ESFMTQTTSK AQDKLSKARR QIQEKELTMS VFNCMKDGAL  120
PAGLTMTDIN DISMHIDKMM KEVNDEIAQR N
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2400600.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046251e-171AP004625.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT14E05, TM0089b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496299.11e-51agamous-like MADS-box protein AGL80
TrEMBLA0A1S2XY103e-50A0A1S2XY10_CICAR; agamous-like MADS-box protein AGL80
STRINGXP_004496299.16e-51(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13237929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.17e-33AGAMOUS-like 80