PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj4g3v2436020.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

GRAS

Protein Properties

Length: 329aa MW: 35996.5 Da PI: 5.9559

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj4g3v2436020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	122.9	3.9e-38	151	265	1	123
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkf 93 lv+ L++cAeav+ ++l+ a+al++++ +la+++ +m+++a+yf+e+La+r+++ +y pp+++++ + +l++ f+e++P+lkf Lj4g3v2436020.1 151 LVHSLMACAEAVDRSNLAVAEALVKQIGHLAASQEGAMRKVATYFAEGLARRIYG----VY---PPQPQQQ--QHFFSDSLQIhFYETCPYLKF 235 689**************************************************....44...5555542..33333444445****** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGl 123 +h+taNqaIlea++g++rvH+iDf i+qG Lj4g3v2436020.1 236 AHFTANQAILEAFQGKDRVHVIDFAINQGX 265 **************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF12041	1.3E-29	24	87	IPR021914	Transcriptional factor DELLA, N-terminal
SMART	SM01129	1.3E-26	24	95	No hit	No description
PROSITE profile	PS50985	23.894	125	329	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-35	151	265	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MKREHEQVSG KSWMGGGGVW EEEDELLAVV GYKVRSSDMA EVAQKLEQLE EAMSDDTIAH 60 HLSSDTIHFN PADIGTWLET MLSNSNFDPT PATTTTSDYD DLKAIPGRAI YAPDSPSSSK 120 RTKTSSSSSP SAESSTRSVV VVDSQENGIR LVHSLMACAE AVDRSNLAVA EALVKQIGHL 180 AASQEGAMRK VATYFAEGLA RRIYGVYPPQ PQQQQHFFSD SLQIHFYETC PYLKFAHFTA 240 NQAILEAFQG KDRVHVIDFA INQGXXXXXX RVAGQGHDGY LPGEANLQRG GVRGFRPDRT 300 ARDTDSVANP VQLGRTLSGS PRVQRVQAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2zsh_B	2e-21	24	110	25	107	DELLA protein GAI
2zsi_B	2e-21	24	110	25	107	DELLA protein GAI
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.1771	0.0	cell culture\| floral bud\| pod\| protoplast\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. {ECO:0000269\|PubMed:15734906}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj4g3v2436020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001240948.1	1e-111	DELLA protein GAI 1
Refseq	XP_003531153.1	1e-111	DELLA protein GAI1
Refseq	XP_028232592.1	1e-111	DELLA protein RGA2-like
Refseq	XP_028243344.1	1e-111	DELLA protein GAI1-like
Swissprot	Q5BN23	9e-96	RGA1_BRACM; DELLA protein RGA1
TrEMBL	A0A2K3M3L9	1e-114	A0A2K3M3L9_TRIPR; Della protein gai1-like protein (Fragment)
STRING	GLYMA05G27190.1	1e-110	(Glycine max)
STRING	GLYMA08G10140.1	1e-110	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF803	34	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	1e-86	GRAS family protein