PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj4g3v2604210.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Protein Properties

Length: 156aa MW: 17996.9 Da PI: 4.4466

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj4g3v2604210.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31.4	3.3e-10	55	150	1	95
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+kv ++ d++ + + lpk ++ +h + e ++l++++gr+++ l+ r+++++ + ++k W ++vk+++Lk +D+v F+ +++++ Lj4g3v2604210.1 55 FDKVISSYDSGGGQTMALPKLYVVNHIRANWE--NIVLQTPRGRTYSCLLK-RRNPRKidtpIHIAKDWYQYVKDHELKYRDVVHFRPVSTHNN 145 8899999999999********999434344..6***********5.55555557788899*******************8776555 PP ..EEE CS B3 91 elvvk 95 +v+ Lj4g3v2604210.1 146 LVNVT 150 45555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.51E-13	53	154	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.9E-12	53	151	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.55E-10	55	153	No hit	No description
SMART	SM01019	0.0084	55	155	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	8.995	55	155	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.8E-8	55	150	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MDVDNIEEND VIMISSDDEE DDGIVQLSDE EEDDGIMQLS DGEEDDGVER VIHNFDKVIS 60 SYDSGGGQTM ALPKLYVVNH IRANWENIVL QTPRGRTYSC LLKRRNPRKI DTPIHIAKDW 120 YQYVKDHELK YRDVVHFRPV STHNNLVNVT ITRGQP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj4g3v2604210.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP010542	1e-144	AP010542.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjB20B09, BM1478, complete sequence.