PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2628690.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 28136.7 Da    PI: 10.2964
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2628690.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.92e-312675150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  Lj4g3v2628690.1 26 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 75
                     79***********************************************8 PP
2K-box109.63.5e-36961906100
            K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      g s++ a+a+ +qqe+akL+ +i+nLq+ +R++lGe L++++ ++L++Le++Lek++++iRskKne+l+++ie++qk+e +l++ n+ Lr+k++
  Lj4g3v2628690.1  96 GGSTSGANAQFYQQEAAKLRVQISNLQNHNRQMLGEALSNMNARDLKNLETKLEKGISRIRSKKNEMLFAEIEYMQKREIDLHNSNQLLRAKIA 189
                      44578899************************************************************************************98 PP

            K-box 100 e 100
                      e
  Lj4g3v2628690.1 190 E 190
                      6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006634.0761878IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-421877IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-321990IPR002100Transcription factor, MADS-box
CDDcd002653.00E-431988No hitNo description
PROSITE patternPS0035002074IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-332040IPR002100Transcription factor, MADS-box
PfamPF003191.2E-262774IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-334055IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-335576IPR002100Transcription factor, MADS-box
PfamPF014863.1E-26103188IPR002487Transcription factor, K-box
PROSITE profilePS5129714.343104194IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSSPNQSMSA NNSPQRKMGR GKIEIKRIEN TTNRQVTFCK RRNGLLKKAY ELSVLCDAEV  60
ALIVFSNRGR LYEYANNSVK ASIERYKKAC SDSSGGGSTS GANAQFYQQE AAKLRVQISN  120
LQNHNRQMLG EALSNMNARD LKNLETKLEK GISRIRSKKN EMLFAEIEYM QKREIDLHNS  180
NQLLRAKIAE SDERKNHNFN MLPGTTNFES LQQSQQPFDS RGFFQVTGLQ PNNNQCARQD  240
QISLQFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-201886169Myocyte-specific enhancer factor 2B
1tqe_Q2e-201886169Myocyte-specific enhancer factor 2B
1tqe_R2e-201886169Myocyte-specific enhancer factor 2B
1tqe_S2e-201886169Myocyte-specific enhancer factor 2B
6c9l_A2e-201886169Myocyte-specific enhancer factor 2B
6c9l_B2e-201886169Myocyte-specific enhancer factor 2B
6c9l_C2e-201886169Myocyte-specific enhancer factor 2B
6c9l_D2e-201886169Myocyte-specific enhancer factor 2B
6c9l_E2e-201886169Myocyte-specific enhancer factor 2B
6c9l_F2e-201886169Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.110510.0pod
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2628690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7704030.0AY770403.1 Lotus corniculatus var. japonicus MADS box protein AGb mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017405872.11e-147PREDICTED: floral homeotic protein AGAMOUS-like
RefseqXP_022638657.11e-147floral homeotic protein AGAMOUS-like isoform X2
RefseqXP_022638658.11e-147floral homeotic protein AGAMOUS-like isoform X2
SwissprotQ435851e-122AG_TOBAC; Floral homeotic protein AGAMOUS
TrEMBLQ533S01e-166Q533S0_LOTJA; MADS box protein AGb (Fragment)
STRINGXP_004504255.11e-142(Cicer arietinum)
STRINGAET043531e-142(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-115MIKC_MADS family protein
Publications ? help Back to Top
  1. Cheung AY,Zhan XY,Wang H,Wu HM
    Organ-specific and Agamous-regulated expression and glycosylation of a pollen tube growth-promoting protein.
    Proc. Natl. Acad. Sci. U.S.A., 1996. 93(9): p. 3853-8
    [PMID:8632979]