PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2775600.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 317aa    MW: 34953.3 Da    PI: 7.1588
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2775600.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-20140189255
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrd +     + +r++lg+f taeeAa+a+++a ++++g
  Lj4g3v2775600.1 140 KYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFNTAEEAARAYDQASLRFRG 189
                      8********.**********66.....56************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-32139198IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-23140198IPR016177DNA-binding domain
SMARTSM003802.8E-35140203IPR001471AP2/ERF domain
CDDcd000183.48E-34140199No hitNo description
PfamPF008472.7E-14140189IPR001471AP2/ERF domain
PROSITE profilePS5103225.067140197IPR001471AP2/ERF domain
PRINTSPR003674.8E-12141152IPR001471AP2/ERF domain
PRINTSPR003674.8E-12163179IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MPMMFHGFNR EKEMSAMVYA LTRVICGDEE EHGGYDHQKM EHSAFGGGGD GDDANFHVTP  60
NIASCSATPS YGGDSFSLKR RREDGDFSCR ASPPAIPPIA ERSSNLTNTA TTKISPMVKP  120
VYEYRTENVR EETEQQPKRK YRGVRQRPWG KWAAEIRDPF KAARVWLGTF NTAEEAARAY  180
DQASLRFRGN KAKLNFPENV RLLQQPSINQ PTTHFSNSNS SEPIVHAEAQ HHTFQGSSGS  240
NSSNFYDYSP MSLYDQANVS STMASHHLQS SSSSSSSYSS MFASSVSSLQ EVSVPSVYST  300
QLPAQYSVHS SSPSGSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-23139200163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.72570.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2775600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3786360.0AB378636.1 Lotus japonicus LjERF18 mRNA for transcription factor AP2-EREBP, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027363788.13e-89ethylene-responsive transcription factor RAP2-6-like
TrEMBLB3IX361e-156B3IX36_LOTJA; Transcription factor AP2-EREBP
STRINGGLYMA05G32040.12e-85(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.12e-33ERF family protein