PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2820190.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 340aa    MW: 38278.9 Da    PI: 6.2373
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2820190.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-19143193256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f  aeeAa a++ a+ kl+ge
  Lj4g3v2820190.1 143 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFEKAEEAALAYDSAAYKLRGE 193
                      59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.38E-33142202No hitNo description
SuperFamilySSF541711.63E-22143201IPR016177DNA-binding domain
PROSITE profilePS5103222.589143200IPR001471AP2/ERF domain
SMARTSM003802.1E-36143206IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-31143201IPR001471AP2/ERF domain
PfamPF008475.4E-13144193IPR001471AP2/ERF domain
PRINTSPR003673.8E-10144155IPR001471AP2/ERF domain
PRINTSPR003673.8E-10166182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MATYIDSYNS SNITMDHFSD PYSEELMKAL EPFMKTDSSS TYLSPEQSQS QSYYPSISNS  60
LHSQQSSKSQ TSFIGLNQLT PSQILQIQAQ FHIQQQQQHH KTAAVASLNR HKQTHLQVPA  120
YLTPKPVPMK HVGGTPAAKP TKLYRGVRQR HWGKWVAEIR LPKNRTRLWL GTFEKAEEAA  180
LAYDSAAYKL RGEFARLNFP HLKKAHVSGE FGDYKPLPSS VDSKLKAICE SLDGKQGNPK  240
MQFNSVEDVK PVLRVPVELA GMESDMEHFN GEVIYPGFED IKVENENPVL SPLSDESSPC  300
SSSPESGVTF FDFSDSNQWD EVENFGLEKY PSLEIDWAAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21142200160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.80910.0protoplast| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2820190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0064190.0AP006419.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT43O18, TM0307, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027365295.11e-110ethylene-responsive transcription factor ERF060-like isoform X1
TrEMBLD3YBG91e-108D3YBG9_TRIRP; Dehydration responsive element binding protein
STRINGXP_004504059.11e-109(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.12e-50ERF family protein