PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2871880.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 226aa    MW: 24411.2 Da    PI: 10.2467
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2871880.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.2e-2055104255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +grW+AeIrdp+    + +r++lg+f+tae Aa a+++ +++++g
  Lj4g3v2871880.1  55 KYRGVRQRP-WGRWAAEIRDPK----KaARVWLGTFDTAEAAALAYDKTALSFKG 104
                      8********.**********94....45**********************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.5E-3254113IPR001471AP2/ERF domain
PfamPF008471.6E-1355104IPR001471AP2/ERF domain
SMARTSM003801.3E-3655118IPR001471AP2/ERF domain
PROSITE profilePS5103224.47455112IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-2155113IPR016177DNA-binding domain
CDDcd000185.32E-3355113No hitNo description
PRINTSPR003672.0E-115667IPR001471AP2/ERF domain
PRINTSPR003672.0E-117894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MSAVVSALVQ VIGGGGTDSL HNQPPIITPS EELTSDSAKE QSQPRQDQGN IIRRKYRGVR  60
QRPWGRWAAE IRDPKKAARV WLGTFDTAEA AALAYDKTAL SFKGSKAKLN FPERVVEVQC  120
IQGPTQGEEG KAKLGYLTNR PQLIHQPQPR APIALPSQSD PVLHGNNFLV PRFYGSDHVF  180
VSSRPSSGAS SSSPSSSGNS RSQQEKELLT FSMQSGGSSS TSDPPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2454115163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the S phase of the cell cycle. {ECO:0000269|PubMed:23616605}.
UniprotTISSUE SPECIFICITY: Strongly expressed in proliferating cells. Detected in root tips, stipules, shoot apex, floral tissues, young siliques and abscission zones. {ECO:0000269|PubMed:23616605}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2871880.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1461150.0BT146115.1 Lotus japonicus clone JCVI-FLLj-1M17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027342825.13e-55ethylene-responsive transcription factor ERF114-like isoform X1
SwissprotQ9FH545e-42EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A445KQY36e-47A0A445KQY3_GLYSO; Ethylene-responsive transcription factor ERF114
STRINGVIT_17s0000g00200.t015e-47(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.11e-43ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]