PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v3002550.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 329aa    MW: 37749.7 Da    PI: 5.0691
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v3002550.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.8e-18108158155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++++GVr+++ +g+W+AeIrd +     r  r +lg++ taeeAa  +++a+ +l+g
  Lj4g3v3002550.1 108 KKFRGVRQRP-WGKWAAEIRDpW-----RrVRRWLGTYNTAEEAAIVYDKAAIELRG 158
                      59********.**********88.....559************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.79E-31108165No hitNo description
PfamPF008474.8E-10109158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-27109166IPR001471AP2/ERF domain
SMARTSM003806.3E-34109172IPR001471AP2/ERF domain
PROSITE profilePS5103222.392109166IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-20109165IPR016177DNA-binding domain
PRINTSPR003676.0E-9110121IPR001471AP2/ERF domain
PRINTSPR003676.0E-9132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MPEPSPKYIQ HLNRTKLLMK PAQLEEHTIN KKHPCPRLIR IHVTDGDATD SDSDSDTPSS  60
QKRRRVKTFV HEVTIEYQNA ASKKRSKAKP STAGGQVRPA PVGVSPGKKF RGVRQRPWGK  120
WAAEIRDPWR RVRRWLGTYN TAEEAAIVYD KAAIELRGFN ALTNFIQLPV ENKNSGEECE  180
NVNLLSPTSV LQYSEETTES DNGVFAHPMR ELNHEYENEE SGNSCDQVSE DKFETESIFP  240
VSSDVEFDFE IQSAMDIFDN AHKTIWECMF FPDDNFSDQS FVFCSESCDF SFPSWHRDYD  300
HFQDIGDFLV SDNSFDSFIK HDSRTCISN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20105177170ATERF1
3gcc_A2e-20105177170ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16165KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v3002550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027343182.11e-88ethylene-responsive transcription factor CRF2-like
TrEMBLA0A1S3UTB83e-77A0A1S3UTB8_VIGRR; ethylene-responsive transcription factor CRF2
STRINGXP_004503833.13e-71(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.21e-36cytokinin response factor 2