PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v3055130.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 231aa    MW: 25613.5 Da    PI: 5.9673
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v3055130.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.1e-184494155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Lj4g3v3055130.1 44 PVYRGVRMRA-WGKWVSEIREPRK---KNRIWLGTFATAEMAARAHDVAALAIKG 94
                     68*****998.**********854...59**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-124494IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-3245103IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2145103IPR016177DNA-binding domain
PROSITE profilePS5103223.06445102IPR001471AP2/ERF domain
SMARTSM003804.3E-3645108IPR001471AP2/ERF domain
PRINTSPR003672.2E-104657IPR001471AP2/ERF domain
CDDcd000182.83E-3246104No hitNo description
PRINTSPR003672.2E-106884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGEQPSSETE KITDIPKRSL SEPRSPDPNE KRTKRPRESN GKHPVYRGVR MRAWGKWVSE  60
IREPRKKNRI WLGTFATAEM AARAHDVAAL AIKGSSAILN FPDLAGSLPR PESKSPRDVQ  120
AAAAKAASMA VSDSKTASHC SYSSSSSEEL GEIVELPRLG TSFEIPDPGS ELVFSDPVDG  180
WPYSHTWYHD GQGIYDDRDC GGYYIGDQIS MQDSESLILC GFEASLWQWQ H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1837102672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.62190.0floral bud
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00529DAPTransfer from AT5G25810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v3055130.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027342714.11e-101ethylene-responsive transcription factor TINY-like
SwissprotQ391276e-62TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLV7CTS78e-96V7CTS7_PHAVU; Uncharacterized protein
STRINGXP_007160302.11e-96(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.15e-50ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]