PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v0104840.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 97aa    MW: 11184.6 Da    PI: 8.8432
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v0104840.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.1e-10751446
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     WTt   +++ +a + + ++   +W + ar +g g+t +++k ++ +
  Lj5g3v0104840.1  7 WTTKQNKRFENALAIYDKDtpdRWQKLARAVG-GKTVEEVKKHYEM 51
                     ********************************.***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.294262IPR017884SANT domain
SMARTSM007177.2E-7355IPR001005SANT/Myb domain
SuperFamilySSF466891.3E-12560IPR009057Homeodomain-like
PfamPF002492.0E-6752IPR001005SANT/Myb domain
CDDcd001672.91E-6753No hitNo description
Gene3DG3DSA:1.10.10.603.2E-4759IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MTSSSGWTTK QNKRFENALA IYDKDTPDRW QKLARAVGGK TVEEVKKHYE MLVDDLKQIE  60
EGHVPLPNYR NAATIGGSNK GYTYMDEEQR MKFLSLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-30197193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v0104840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027333303.12e-58protein RADIALIS-like 3
SwissprotF4JVB85e-34RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A445H2R22e-56A0A445H2R2_GLYSO; Protein RADIALIS-like 1 isoform A
TrEMBLK7M5F62e-56K7M5F6_SOYBN; Uncharacterized protein
STRINGGLYMA14G08101.13e-57(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-36RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]