PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v0290680.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 380aa    MW: 43802.1 Da    PI: 6.6793
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v0290680.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00014145168123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y+C+ Cg+ ++++ +Lk+H +  H
  Lj5g3v0290680.1 145 YVCTVCGRKCKTNLDLKKHFKQlH 168
                      9******************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10104.0E-765149IPR029060PIN domain-like
PROSITE profilePS5015710.949145173IPR007087Zinc finger, C2H2
SMARTSM003550.0048145168IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280147168IPR007087Zinc finger, C2H2
CDDcd061673.90E-12157299No hitNo description
Gene3DG3DSA:3.40.50.10104.0E-7230298IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MNPLSLLHTA NAPPPPCPLL HHHRQKPTTV SVSVLFPHRH NRFRCCSSIE IDMVRDNKTG  60
SYAAKQNKVV VLWDLDNKPP RGPPYHAAVS LKTLAESFGD VVDISAYANR HAFIHLPQWV  120
LHERRQRKTT DILEKKGIVT PSDPYVCTVC GRKCKTNLDL KKHFKQLHQR ERQKKLNRMN  180
SLKGKKRQRF KERFIRGNHK YNEAARTLVT PKVGYGLASE LRRAGVFVKT VEDKPQAADW  240
ALKRQMQHSM SRGIDWLFLV SDDSDFSEML KRAREANLGT VVVGDADRAL GQHADFWVPW  300
IAVEKGEVSE MDLKNRERRR RRTTTEDSPD GLFFNEGDEE LDDDFVLVYS EDDDDDDDDD  360
DDDDDYTDDE DEEEGGFYSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317322RRRRRT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.225620.0pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v0290680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0105200.0AP010520.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT30K21, TM1873b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028772573.11e-177uncharacterized protein LOC114729706
TrEMBLA0A1S2Y4Y61e-174A0A1S2Y4Y6_CICAR; uncharacterized protein LOC101501064
STRINGXP_004498877.11e-174(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64413135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-156C2H2-like zinc finger protein