PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v0473570.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family CO-like
Protein Properties Length: 281aa    MW: 31081.4 Da    PI: 6.6208
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v0473570.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box32.51.8e-10852442
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     ++C+ +++ +++lfC+ +   lC +C   +H+       H++vp+
  Lj5g3v0473570.2  8 KMCDSCKSSPATLFCRADAASLCVSCDHDIHSAnplarrHERVPI 52
                     68*****************************66899999*99997 PP
2CCT70.15.7e-24216259144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea++lRY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  Lj5g3v0473570.2 216 REARVLRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRS 259
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.4E-14552IPR000315B-box-type zinc finger
PROSITE profilePS5011912.23552IPR000315B-box-type zinc finger
PfamPF006431.1E-8852IPR000315B-box-type zinc finger
CDDcd000212.30E-10952No hitNo description
PfamPF062031.1E-17216258IPR010402CCT domain
PROSITE profilePS5101716.797216258IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAITTTTKMC DSCKSSPATL FCRADAASLC VSCDHDIHSA NPLARRHERV PIAPFHHHNH  60
NTTYLSDADA ADVTTDEAEA ASWLLPTPSN PKGPDLNSSH YSYSEIDTVE LDFTKIDSPE  120
HNSAATADGV VPVQSQSKIT TIEHHYDNDA NNQIDFPTSK PFAHNYNAKS HYHAVSSPSM  180
EVGVVPDGNA MSEISYCCYG TPAPAVEAVQ FSAADREARV LRYREKRKNR RFEKTIRYAS  240
RKAYAETRPR IKGRFAKRSD VNVNLLTEED PFSGYGVVPT C
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.114310.0cell culture| floral bud| protoplast
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v0473570.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045130.0AP004513.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT01O22, TM0043a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498823.11e-126zinc finger protein CONSTANS-LIKE 4-like
SwissprotQ940T99e-63COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A1S2Y3K21e-125A0A1S2Y3K2_CICAR; zinc finger protein CONSTANS-LIKE 4-like
STRINGXP_004498823.11e-125(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-60CONSTANS-like 4