PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v0473580.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family DBB
Protein Properties Length: 235aa    MW: 25879.8 Da    PI: 6.6011
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v0473580.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.17.3e-08851442
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     ++C+ +++ +++lfC+ + q+lC  C +++H        H +vpl
  Lj5g3v0473580.1  8 KMCDSCKSSPATLFCRAD-QPLCFPCDSTIHAAnklasrHPRVPL 51
                     68***************8.6***********66788888988886 PP
2zf-B_box28.62.9e-094994342
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      + C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  Lj5g3v0473580.1 49 VPLCEVCEQAPASVTCKADAASLCVSCDHDIHSAnplarrHERVPI 94
                     689*****************************66899999**9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501198.617551IPR000315B-box-type zinc finger
SMARTSM003362.7E-10551IPR000315B-box-type zinc finger
PfamPF006431.7E-5851IPR000315B-box-type zinc finger
CDDcd000212.69E-7951No hitNo description
PROSITE profilePS5011910.6944794IPR000315B-box-type zinc finger
PfamPF006432.5E-74994IPR000315B-box-type zinc finger
CDDcd000211.32E-75094No hitNo description
SMARTSM003362.4E-95294IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MAITTTTKMC DSCKSSPATL FCRADQPLCF PCDSTIHAAN KLASRHPRVP LCEVCEQAPA  60
SVTCKADAAS LCVSCDHDIH SANPLARRHE RVPIAPFHHH NHNTTYLSDA DAADVTTDEA  120
EAASWLLPTP SNPKGPDLNS SHYSYSEIDT VELDFTKIDS PEHNSAATAD GVVPVQSQSK  180
ITTIEHHYDN DANNQIDFPT SKPFAHNYNA KSHYHAVRLT KNRKIMFMVQ RTSLI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.114310.0cell culture| floral bud| protoplast
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v0473580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045130.0AP004513.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT01O22, TM0043a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498823.17e-88zinc finger protein CONSTANS-LIKE 4-like
SwissprotQ9SK535e-52COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLA0A2Z6LNN85e-91A0A2Z6LNN8_TRISU; Uncharacterized protein
STRINGXP_004498823.13e-87(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.28e-53CONSTANS-like 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]