PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v0483800.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 238aa    MW: 26892.4 Da    PI: 8.5901
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v0483800.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.92.1e-2871129259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK+ k++  pr+Y+rC++a +Cp+kkkv+r+++d +++  tY geHnh+
  Lj5g3v0483800.1  71 KDGYQWRKYGQKVTKDNGSPRAYFRCSMApTCPAKKKVQRCTHDRSILAATYDGEHNHS 129
                      8***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.07665131IPR003657WRKY domain
SuperFamilySSF1182901.44E-2467129IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.4E-2868129IPR003657WRKY domain
SMARTSM007743.7E-3070130IPR003657WRKY domain
PfamPF031061.5E-2371128IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MLEVLSSKCR KLESQLEEIN KNEQKGISSY QIESLSNHVS SKRARLEFPT VKKPLEIFFR  60
TLPNDDTLLI KDGYQWRKYG QKVTKDNGSP RAYFRCSMAP TCPAKKKVQR CTHDRSILAA  120
TYDGEHNHSA LDDSFRPSSS TPKGSSIANN LSPTIIPYDK EAMNNVFAIS DWAQTNARLY  180
EDVIPQHVHG SNIKIEDYIS SVIKDPDFTT ALAEAVAHII TGQHKRQSLN LNLDIPKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-18691281371WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v0483800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020206660.11e-106probable WRKY transcription factor 40
RefseqXP_020206662.11e-106probable WRKY transcription factor 40
RefseqXP_027939733.11e-106probable WRKY transcription factor 40
TrEMBLA0A371HC051e-112A0A371HC05_MUCPR; Putative WRKY transcription factor 40 (Fragment)
STRINGXP_004498813.11e-104(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73983044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.19e-39WRKY DNA-binding protein 40