PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj5g3v0539820.1

Common Name

cpp1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

CPP

Protein Properties

Length: 897aa MW: 97226.1 Da PI: 6.7883

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj5g3v0539820.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.9	1.3e-15	508	546	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkkskClk+YC+Cfaag++C + C+C+dC+Nk e Lj5g3v0539820.1 508 CKRCNCKKSKCLKLYCDCFAAGVFCLDPCSCQDCFNKPE 546 89**********************************976 PP
2	TCR	48.5	1.8e-15	594	631	2	39
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 +++gCnCk+s ClkkYCeC+++++ Cs+ C+Ce+CkN Lj5g3v0539820.1 594 HTRGCNCKRSMCLKKYCECYQSNVGCSSGCRCEGCKNV 631 889**********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	4.2E-17	506	547	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	35.248	507	633	IPR005172	CRC domain
Pfam	PF03638	1.4E-11	509	544	IPR005172	CRC domain
SMART	SM01114	8.1E-17	593	634	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	2.8E-11	596	630	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 897 aa Download sequence Send to blast
MMDSPEPSKI NRSSSASALN ASVNTPSSES PQVQESPFFR FASNLSPMRP AKACHVAPSF 60 LGLNSPPLVF KSPRVNCDRE SRYLERPQGT HLSSVEMSQS YNGGNSLRVA PGDSNESNSQ 120 LPLPERFATD TQQDIGLRND TNTQSCSSPT SVDEYLADPG DTDEMYSVNP DVEQSTYAVE 180 SEPSNLTRTK KVILKCNGND DPGDKAEEPS PLSEESNEIH QERPVENPET EGDKRVVERV 240 SQEHTKLESN LAADVSHNSL TQHAGNGPDH SDCAAQSMSD PLQDVKESKD CHEMVSTLHV 300 RQENISQDGS EASLKYHGIR RRCLKFGEAA SSALGSNMSN MKLNATSSQM HFVNPFKPVS 360 SLYLQRGIPE TGSKPAGIGL HLNSIINGMP PSCASTTGMR SSDVLQGMQS TSSISLNKVE 420 NMKKYVISSN MDRQPLVDNR NEIHETDASL AADYFSPSLK EPIALYPASG HDKRKLSPTD 480 AGNSEGLDQH TPGKKKKKTS STADGNGCKR CNCKKSKCLK LYCDCFAAGV FCLDPCSCQD 540 CFNKPEYGEK VLETRQQIES RNPLAFAPKI VKSATNAPSN MEDVNLTTPS SARHTRGCNC 600 KRSMCLKKYC ECYQSNVGCS SGCRCEGCKN VYGKKEDYVA PDHALSKERV SSNVEKGSDS 660 TMLNKPEMVA SREDLFQKEF YDQHHLSPIT PSLQCSDQGK DMFPSHRSLM LTDSCDSKSY 720 ENVQSPAPPC NSASCILQLT PLSNPDSTSG APSIPAKPVG TSAPSSRVSH GCVRQLSGGS 780 LRWRSSPVTP RNTNLGEAQH LQGLESDSRL FDIVEDETPA ILKESSTPTK TVKANSPIQK 840 RVSPPRVIGS SSSGGLRTGR KFILKSVPSF PPLTPCMDSK GNGNEDGNVD SGNGATK

Sequence ? help Back to Top

Protein Sequence Length: 897 aa Download sequence Send to blast

MMDSPEPSKI NRSSSASALN ASVNTPSSES PQVQESPFFR FASNLSPMRP AKACHVAPSF  60
LGLNSPPLVF KSPRVNCDRE SRYLERPQGT HLSSVEMSQS YNGGNSLRVA PGDSNESNSQ  120
LPLPERFATD TQQDIGLRND TNTQSCSSPT SVDEYLADPG DTDEMYSVNP DVEQSTYAVE  180
SEPSNLTRTK KVILKCNGND DPGDKAEEPS PLSEESNEIH QERPVENPET EGDKRVVERV  240
SQEHTKLESN LAADVSHNSL TQHAGNGPDH SDCAAQSMSD PLQDVKESKD CHEMVSTLHV  300
RQENISQDGS EASLKYHGIR RRCLKFGEAA SSALGSNMSN MKLNATSSQM HFVNPFKPVS  360
SLYLQRGIPE TGSKPAGIGL HLNSIINGMP PSCASTTGMR SSDVLQGMQS TSSISLNKVE  420
NMKKYVISSN MDRQPLVDNR NEIHETDASL AADYFSPSLK EPIALYPASG HDKRKLSPTD  480
AGNSEGLDQH TPGKKKKKTS STADGNGCKR CNCKKSKCLK LYCDCFAAGV FCLDPCSCQD  540
CFNKPEYGEK VLETRQQIES RNPLAFAPKI VKSATNAPSN MEDVNLTTPS SARHTRGCNC  600
KRSMCLKKYC ECYQSNVGCS SGCRCEGCKN VYGKKEDYVA PDHALSKERV SSNVEKGSDS  660
TMLNKPEMVA SREDLFQKEF YDQHHLSPIT PSLQCSDQGK DMFPSHRSLM LTDSCDSKSY  720
ENVQSPAPPC NSASCILQLT PLSNPDSTSG APSIPAKPVG TSAPSSRVSH GCVRQLSGGS  780
LRWRSSPVTP RNTNLGEAQH LQGLESDSRL FDIVEDETPA ILKESSTPTK TVKANSPIQK  840
RVSPPRVIGS SSSGGLRTGR KFILKSVPSF PPLTPCMDSK GNGNEDGNVD SGNGATK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	5e-19	511	631	14	121	Protein lin-54 homolog
5fd3_B	5e-19	511	631	14	121	Protein lin-54 homolog
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.882	0.0	floral bud\| pod

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj5g3v0539820.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ619693	0.0	AJ619693.1 Lotus corniculatus var. japonicus mRNA for cysteine-rich polycomb-like protein (cpp1 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027333149.1	0.0	protein tesmin/TSO1-like CXC 2
TrEMBL	Q705X1	0.0	Q705X1_LOTJA; Cysteine-rich polycomb-like protein
STRING	XP_004498660.1	0.0	(Cicer arietinum)
STRING	GLYMA17G31399.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8565	28	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	5e-60	TESMIN/TSO1-like CXC 2

Publications ? help Back to Top
Andersen SU, et al. The glucocorticoid-inducible GVG system causes severe growth defects in both root and shoot of the model legume Lotus japonicus. Mol. Plant Microbe Interact., 2003. 16(12): p. 1069-76 [PMID:14651340]